Chemistry and Biochemistry
Faculty of Science
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Past Publications
2019:
Aravindakshan, N.P., Johnson, K.E., and East, A.L.L. The origin of the conductivity maximum in molten salts. III. Zinc halides. J. Chem. Phys. 2019, 151, 034507 (10p).
Pill, M.F., East, A.L.L., Marx, D., Beyer, M.K., and Clausen-Schaumann, H. Mechanical activation drastically accelerates amide bond hydrolysis, matching enzyme activity. Angew. Chem. Int. Ed. 2019, 58, 9787-9790.
Pill, M.F., East, A.L.L., Marx, D., Beyer, M.K., and Clausen-Schaumann, H. Mechanical activation drastically accelerates amide bond hydrolysis, matching enzyme activity. Angew. Chem. Int. Ed. 2019, 58, 9787-9790.
Sadraei, R., Murphy, R.S., Laurenti, E. and Magnacca, G. Characterization methodology to evaluate the activity of supported soybean peroxidase. Ind. Eng. Chem. Res. 2019, 58, 19802-19809.
Bittmann, S.F., Dsouza, R., Siddiqui, K.M., Hayes, S.A., Rossos, A., Corthey, G., Kochman, M., Prokhorenko, V.I., Murphy, R.S., Schwoerer, H. and Miller, R.J.D. Ultrafast ring-opening and solvent-dependent product relaxation of photochromic spironaphthopyran. Phys. Chem. Chem. Phys. 2019, DOI: 10.1039/c9cp02950h.
Sang, M.S.J., Cai, J., Kandasamy, Y.S. and Murphy, R.S. Synthesis of amphiphilic asymmetrical dithienylethenes with aryl groups at the reactive carbons. Can. J. Chem. 2019, 97, 398-405.
Xin X., Huang G., An C., Raina-Fulton R., and Weger H. Insights into Long-Term Toxicity of Triclosan to Freshwater Green Algae in Lake Erie. Env. Sci. Tech. 2019, 53, 2189-2198.
Kumar A., Hosseinnia A., Gagarinova A., Phanse S., Kim S., Aly K., Zilles S., and Babu M. A Gaussian process-based definition reveals new and bona fide genetic interactions com-pared to a multiplicative model in the Gram-negative Escherichia coli. Bioinformatics (Oxford, England) 2019, published online Aug. 27.
Wu Z., Malty R., Moutaoufik M.T., Zhang Q., Jessulat M., and Babu M. A Tag-Based Affinity Purification Mass Spectrometry Workflow for Systematic Isolation of the Human Mitochondrial Protein Complexes. Adv. Exp. Med. Biol. 2019, 1158, 83-100.
Santiago-Cartagena E., González-Crespo S., Vélez V., Martínez N., Snider J., Jessulat M., Aoki H., Minic Z., Akamine P., Mejías I., Pérez L.M., Rymond B.C., Babu M., Stagljar I., and Rodríguez-Medina J.R. Identification and Functional Testing of Novel Interacting Protein Partners for the Stress Sensors Wsc1p and Mid2p of Saccharomyces cerevisiae. G3 (Bethesda, Md.) 2019, 9, 1085-1102.
Carlson M.L., Stacey R.G., Young J.W., Wason I.S., Zhao Z., Rattray D.G., Scott N., Kerr C.H., Babu M., Foster L.J., and Duong Van Hoa F. Profiling the Escherichia coli membrane protein interactome captured in Peptidisc libraries. eLife 2019, 8, e48615 (26p).
King, R.C., Nilewar, S. and Sterenberg, B.T. Phosphorus-carbon Bond Forming Reactions of Iron Tetracarbonyl-Coordinated Phosphenium Ions. J. Organomet. Chem. 2019, 880, 68-74.
Xin X., Huang G., An C., Raina-Fulton R., and Weger H. Insights into Long-Term Toxicity of Triclosan to Freshwater Green Algae in Lake Erie. Env. Sci. Tech. 2019, 53, 2189-2198.
Kumar A., Hosseinnia A., Gagarinova A., Phanse S., Kim S., Aly K., Zilles S., and Babu M. A Gaussian process-based definition reveals new and bona fide genetic interactions com-pared to a multiplicative model in the Gram-negative Escherichia coli. Bioinformatics (Oxford, England) 2019, published online Aug. 27.
Wu Z., Malty R., Moutaoufik M.T., Zhang Q., Jessulat M., and Babu M. A Tag-Based Affinity Purification Mass Spectrometry Workflow for Systematic Isolation of the Human Mitochondrial Protein Complexes. Adv. Exp. Med. Biol. 2019, 1158, 83-100.
Santiago-Cartagena E., González-Crespo S., Vélez V., Martínez N., Snider J., Jessulat M., Aoki H., Minic Z., Akamine P., Mejías I., Pérez L.M., Rymond B.C., Babu M., Stagljar I., and Rodríguez-Medina J.R. Identification and Functional Testing of Novel Interacting Protein Partners for the Stress Sensors Wsc1p and Mid2p of Saccharomyces cerevisiae. G3 (Bethesda, Md.) 2019, 9, 1085-1102.
Carlson M.L., Stacey R.G., Young J.W., Wason I.S., Zhao Z., Rattray D.G., Scott N., Kerr C.H., Babu M., Foster L.J., and Duong Van Hoa F. Profiling the Escherichia coli membrane protein interactome captured in Peptidisc libraries. eLife 2019, 8, e48615 (26p).
Bakir, G., Girouard, B. E., Johns, R. W., Findlay, C. R.-J., Bechtel, H. A., Eisele, M., Kaminskyj, S. G. W., Dahms, T. E. S. and Gough, K. M. Ultrastructural and SINS analysis of the cell wall integrity response of Aspergillus nidulans to the absence of galactofuranose The Analyst 2019, 144, 928-934.
2018:
Rossos, A., Katsiaflaka, M., Cai, J., Myers, S.M., Koenig, E., Bücker, R., Keskin, S., Kassier, G., Gengler, R.Y.N., Miller, R.J.D., and Murphy, R.S. Photochromism of amphiphilic dithienylethenes as Langmuir–Schaefer films. Langmuir 2018, 34, 10905-10912.
Nilewar, S., Jayaraman, A. and Sterenberg, B.T. Alkyne Insertion into P-C(sp2) Bonds as a Route to Fused Phospholes: Transition-metal like Reactivity at Phosphorus. Organometallics 2018, 37, 4699–4710.
Minic Z., Dahms T.E.S., and Babu M. Chromatographic separation strategies for precision mass spectrometry to study protein-protein interactions and protein phosphorylation. J. Chromatography B 2018, 1102-1103, 96-108.
Shahina Z., El-Ganiny A.M., Minion J., Whiteway M., Sultana T., and Dahms T.E.S. Cinnamomum zeylanicum bark essential oil induces cell wall remodelling and spindle defects in Candida albicans. Fungal Biol. Biotechnol. 2018, 5, 3.
Bhat S.V., Sultana T., Koernig A., McGrath S., Shahina Z., and Dahms T.E.S. Correlative atomic force microscopy quantitative imaging-laser scanning confocal microscopy quantifies the impact of stressors on live cells in real-time. Sci. Reports 2018, 8, 8305.
Bhat S.V., Kamencic B., Koernig A., Shahina Z., and Dahms T.E.S. Exposure to Sub-lethal 2,4-Dichlorophenoxyacetic Acid Arrests Cell Division and Alters Cell Surface Properties in Escherichia coli. Front. Microbiol. 2018, 9, 44.
Li L., Aslam M., Rabii F., Vanderwel M.C., Ashton N.W., and Suh D.Y. PpORS, an ancient type III polyketide synthase, is required for integrity of leaf cuticle and resistance to dehydration in the moss, Physcomitrella patens. Planta 2018, 247, 527-541.
Raina-Fulton, R. and Mohamad, A.A. Pressurized Solvent Extraction with Ethyl Acetate and Liquid Chromatography-Tandem Mass Spectrometry for the Analysis of Selected Conazole Fungicides in Matcha. Toxics 2018, 6, 64 (13p).
Babu, M., Bundalovic-Torma, C., Calmettes, C., Phanse, S., Zhang, Q., Jiang, Y., Minic, Z., Kim, S., Mehla, J., Gagarinova, A., Rodionova, I., Kumar, A., Guo, H., Kagan, O., Pogoutse, O., Aoki, H., Deineko, V., Caufield, J.H., Holtzapple E., Zhang Z., Vastermark A., Pandya Y., Lai C.C., El Bakkouri M., Hooda Y., Shah M., Burnside D., Hooshyar, M., Vlasblom, J., Rajagopala, S.V., Golshani, A., Wuchty, S., F Greenblatt, J., Saier, M., Uetz, P., F Moraes, T., Parkinson, J., and Emili, A. Global landscape of cell envelope protein complexes in Escherichia coli. Nat Biotechnol. 2018, 36, 103-112.
Rodionova, I.A., Goodacre, N., Babu, M., Emili, A., Uetz, P., and Saier, M.H. Jr. The Nitrogen Regulatory PII Protein (GlnB) and N-Acetylglucosamine 6-Phosphate Epimerase (NanE) Allosterically Activate Glucosamine 6-Phosphate Deaminase (NagB) in Escherichia coli. J Bacteriol. 2018, 200, e00691-17 (13p).
Galván Márquez, I., Ghiyasvand, M., Massarsky, A., Babu, M., Samanfar, B., Omidi, K., Moon, T.W., Smith, M.L., and Golshani, A. Zinc oxide and silver nanoparticles toxicity in the baker's yeast, Saccharomyces cerevisiae. PLoS One 2018, 13, e0193111 (19p).
Shahina Z., El-Ganiny A.M., Minion J., Whiteway M., Sultana T., and Dahms T.E.S. Cinnamomum zeylanicum bark essential oil induces cell wall remodelling and spindle defects in Candida albicans. Fungal Biol. Biotechnol. 2018, 5, 3.
Bhat S.V., Sultana T., Koernig A., McGrath S., Shahina Z., and Dahms T.E.S. Correlative atomic force microscopy quantitative imaging-laser scanning confocal microscopy quantifies the impact of stressors on live cells in real-time. Sci. Reports 2018, 8, 8305.
Bhat S.V., Kamencic B., Koernig A., Shahina Z., and Dahms T.E.S. Exposure to Sub-lethal 2,4-Dichlorophenoxyacetic Acid Arrests Cell Division and Alters Cell Surface Properties in Escherichia coli. Front. Microbiol. 2018, 9, 44.
Li L., Aslam M., Rabii F., Vanderwel M.C., Ashton N.W., and Suh D.Y. PpORS, an ancient type III polyketide synthase, is required for integrity of leaf cuticle and resistance to dehydration in the moss, Physcomitrella patens. Planta 2018, 247, 527-541.
Raina-Fulton, R. and Mohamad, A.A. Pressurized Solvent Extraction with Ethyl Acetate and Liquid Chromatography-Tandem Mass Spectrometry for the Analysis of Selected Conazole Fungicides in Matcha. Toxics 2018, 6, 64 (13p).
Babu, M., Bundalovic-Torma, C., Calmettes, C., Phanse, S., Zhang, Q., Jiang, Y., Minic, Z., Kim, S., Mehla, J., Gagarinova, A., Rodionova, I., Kumar, A., Guo, H., Kagan, O., Pogoutse, O., Aoki, H., Deineko, V., Caufield, J.H., Holtzapple E., Zhang Z., Vastermark A., Pandya Y., Lai C.C., El Bakkouri M., Hooda Y., Shah M., Burnside D., Hooshyar, M., Vlasblom, J., Rajagopala, S.V., Golshani, A., Wuchty, S., F Greenblatt, J., Saier, M., Uetz, P., F Moraes, T., Parkinson, J., and Emili, A. Global landscape of cell envelope protein complexes in Escherichia coli. Nat Biotechnol. 2018, 36, 103-112.
Rodionova, I.A., Goodacre, N., Babu, M., Emili, A., Uetz, P., and Saier, M.H. Jr. The Nitrogen Regulatory PII Protein (GlnB) and N-Acetylglucosamine 6-Phosphate Epimerase (NanE) Allosterically Activate Glucosamine 6-Phosphate Deaminase (NagB) in Escherichia coli. J Bacteriol. 2018, 200, e00691-17 (13p).
Galván Márquez, I., Ghiyasvand, M., Massarsky, A., Babu, M., Samanfar, B., Omidi, K., Moon, T.W., Smith, M.L., and Golshani, A. Zinc oxide and silver nanoparticles toxicity in the baker's yeast, Saccharomyces cerevisiae. PLoS One 2018, 13, e0193111 (19p).
2017:
Jayaraman, A., Nilewar, S., Jacob, T.V., and Sterenberg, B.T. Sequential Electrophilic Substitution Reactions of Tungsten-coordinated Phosphenium Ions and Phosphine Triflates. ACS Omega 2017, 2, 7849-7861.
Hubick, S., Jayaraman, A., McKeen, A., Reid, S. Alcorn, J., Stavrinides, J., Sterenberg, B.T. A potent synthetic inorganic antibiotic with activity against drug-resistant pathogens. Scientific Reports 2017, 17,
41999.